PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053721-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 200aa    MW: 22703.3 Da    PI: 4.8292
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053721-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.1e-112311647
                      HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +++lG++ W++Ia +++ gRt++++k++w++ 
  PSME_00053721-RA  2 HRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 31
                      789****.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-15133IPR009057Homeodomain-like
PROSITE profilePS5129419.326136IPR017930Myb domain
CDDcd001673.04E-7130No hitNo description
PfamPF002495.8E-9231IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-8236IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT CLRRKTLSVN KNQSKSNSQN LESRSNIPSP  60
ALPSHVFKTQ PVKPAAVIYS EILRSNRCTG YGPSDCRSEE PVKLCNVKES TNSSTDYDRK  120
TIDFEMADVN LLETKAGNYS CSIWNLEEER SLPDSYCCPE DTAAFFESLL ELNRLPSPDC  180
NLLSSPVDCS TDFEVEEFYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ64e-45B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-17myb domain protein 5