PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053786-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 321aa    MW: 35728.5 Da    PI: 9.6496
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053786-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1755115257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+t+++eq+++Le++F + +  p +ee++++ ++l    ++ + +V++WFqNr+ + k+
  PSME_00053786-RA  55 KSRWTPKPEQIQILESMFTSgTVSPGREEIKRIRAQLevfgQVGDVNVFYWFQNRKNRSKR 115
                       89*****************99*************************************997 PP
2Wus_type_Homeobox103.31.7e-3354116264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a++RWtP+peQi+iLe++++sG+++P +eei+ri+a+Le +G+++d NVfyWFQNrk R+++k
   PSME_00053786-RA  54 AKSRWTPKPEQIQILESMFTSGTVSPGREEIKRIRAQLEVFGQVGDVNVFYWFQNRKNRSKRK 116
                        689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-837116IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1249118IPR009057Homeodomain-like
PROSITE profilePS5007111.30551116IPR001356Homeobox domain
SMARTSM003892.9E-653120IPR001356Homeobox domain
PfamPF000462.2E-1555115IPR001356Homeobox domain
CDDcd000861.75E-655116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNPRKHWPSM FLKSNSLTPA AYQLPETSKS ASYSGTGELS HSYTLERESS PPKAKSRWTP  60
KPEQIQILES MFTSGTVSPG REEIKRIRAQ LEVFGQVGDV NVFYWFQNRK NRSKRKPRLP  120
AAQRTKARAQ SGTQSSTSTS RSTSVQTKTI PDLSNSPASS MQTNIRNQYP SSAVPISQFA  180
RHHNDIQGVY EEMNKASSVP SQTFTALLNS PVNPMPNNLE NQYSYSSVPV PSFAGHHYDQ  240
QVFPSQTFTG LPNNPPNNMH SDGQDQYCSS STVPVASSAE NLYGQERLYK ETSNTSTFDQ  300
SKTIVDVANI QPNPMENHIA D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RSKRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.18e-31homeobox-3