PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053842-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 206aa    MW: 22879.5 Da    PI: 5.6301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053842-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-163382255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+WvAeIr p++   r++++lg++ ta +Aa+a++aa  +l+g
  PSME_00053842-RA 33 QFKGIRLRK-WGSWVAEIRMPRS---RAKIWLGSYKTAGQAARAYDAALYCLRG 82
                      69*****99.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.0863390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-273392IPR001471AP2/ERF domain
SMARTSM003805.3E-273396IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-183392IPR016177DNA-binding domain
CDDcd000181.22E-233392No hitNo description
PRINTSPR003671.1E-63445IPR001471AP2/ERF domain
PfamPF008471.0E-93482IPR001471AP2/ERF domain
PRINTSPR003671.1E-65672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEKPTRQEHD HIDQAQVQAH ALPDEAPGKT SHQFKGIRLR KWGSWVAEIR MPRSRAKIWL  60
GSYKTAGQAA RAYDAALYCL RGPAAKFNFP DSVPNIPPAS SLSRKQIQDA AAKYALGELH  120
SISPSTYNNS MEDPAFLSPL QSSSLSSDQD ALWKSLFAET DGVGCLNFDK FPSIDDETLA  180
SDGLFSTSEE SYIYVDPTEL WNFGKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-132890972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMR55e-55B8LMR5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-35ERF family protein