PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053932-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 150aa    MW: 17637.4 Da    PI: 9.8413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053932-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-072411255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      RR+r++s   +L +llP++    s Kl+     e++++YI++L+
  PSME_00053932-RA  2 RRKRMKSLCTQLESLLPSP----SAKLDRCGLFEETINYIRKLE 41
                      ******************9....9*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.963140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-8252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-5241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-9254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MRRKRMKSLC TQLESLLPSP SAKLDRCGLF EETINYIRKL EENMQQLKRK RDSLLAIQSG  60
KTANKNIEIK VAVEFYGREA IISITSQRGP RHMWRILEEL EKHGLDVATE QLFTGEFFVF  120
VFFHVNFRDN ISHDPTQIRT SLECRLKSTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0864591e-164EF086459.1 Picea sitchensis clone WS02745_D02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-88A9NYK8_PICSI; Uncharacterized protein