PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00054032-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YC

Protein Properties

Length: 204aa MW: 23228.5 Da PI: 7.9116

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00054032-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	151.3	1.8e-47	75	169	8	102
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 + i++a df+nh+lPlarikki+k+de+v+misaeaP++++kace+fi eltlr+w+++ee+krrtl+k+dia+a+trtdifdfl+di prde PSME_00054032-RA 75 QGIDQAVDFRNHSLPLARIKKIMKSDENVRMISAEAPMVFAKACEMFINELTLRAWNQTEETKRRTLQKNDIATAITRTDIFDFLIDILPRDE 167 4499****************************************************************************************8 PP NF-YC 101 lk 102 lk PSME_00054032-RA 168 LK 169 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.49E-31	61	159	IPR009072	Histone-fold
Pfam	PF00808	1.2E-22	87	150	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.8E-37	88	165	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MDQQLSMQHM PIQYHGATPY QSGQILLPIG HGTFQQPPSS SYANATALSL SAHHNQLAYQ 60 QQHQDVQSSR ANQVQGIDQA VDFRNHSLPL ARIKKIMKSD ENVRMISAEA PMVFAKACEM 120 FINELTLRAW NQTEETKRRT LQKNDIATAI TRTDIFDFLI DILPRDELKE DKHPAPRGVL 180 IVRKPMDPAI HMQNMLRQGH MHGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-50	72	165	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010025170.1	1e-61	PREDICTED: nuclear transcription factor Y subunit C-3
Refseq	XP_010025171.1	1e-61	PREDICTED: nuclear transcription factor Y subunit C-3
Swissprot	Q8LCG7	2e-54	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A9NTJ8	1e-66	A9NTJ8_PICSI; Uncharacterized protein
STRING	XP_010025170.1	4e-61	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	8e-57	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]