PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054072-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 217aa    MW: 25652.8 Da    PI: 6.3167
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054072-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-193992356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k +++t eq+++Le+ F+ ++++ a+++eeLA+ lgL  r + vWFqNrRa++k
  PSME_00054072-RA 39 KSRRLTMEQVRALERSFQLENTLEARRKEELARALGLHPRHIAVWFQNRRARWK 92
                      44589************************************************9 PP
2HD-ZIP_I/II112.23.4e-3639130293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       k rrl+ eqv++LE+sF+ e++Le +rK+elar+Lgl+pr +avWFqnrRAR+ktkqlEkd  +Lk++y++ +++ ++L +e+++L++e+k+
  PSME_00054072-RA  39 KSRRLTMEQVRALERSFQLENTLEARRKEELARALGLHPRHIAVWFQNRRARWKTKQLEKDLGVLKQEYESFQARYRTLLEENQKLQSEVKR 130
                       88**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-202196IPR009057Homeodomain-like
PROSITE profilePS5007116.5683494IPR001356Homeobox domain
SMARTSM003892.9E-183798IPR001356Homeobox domain
CDDcd000861.43E-143895No hitNo description
PfamPF000463.3E-163992IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-194199IPR009057Homeodomain-like
PRINTSPR000311.4E-56574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000311.4E-57490IPR000047Helix-turn-helix motif
PfamPF021835.3E-1194133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
KVRSHIMERG ANSCSHFDTH SLEISSSESV YNYHGMSKKS RRLTMEQVRA LERSFQLENT  60
LEARRKEELA RALGLHPRHI AVWFQNRRAR WKTKQLEKDL GVLKQEYESF QARYRTLLEE  120
NQKLQSEVKR LSSINDQSKN DKEIMRDEQI DFNIVPEIKE EFCGVSDIED NITQQASIEE  180
TCGQNMLVAL EEEDCYYNMG KRIGFMFVDD HWTPSFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313779.19e-34homeobox-leucine zipper protein HAT5-like
SwissprotQ940J11e-32ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA9NV372e-35A9NV37_PICSI; Uncharacterized protein
TrEMBLQ3HRT12e-35Q3HRT1_PICGL; Homeobox-leucine zipper-like protein
STRINGGorai.011G095900.18e-33(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-35homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]