PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00054149-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 97aa MW: 10833.4 Da PI: 5.8128

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00054149-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.9	1.4e-18	24	96	8	80
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 ++++C ++C l f +++ +kf +++++FGa nv+kl ++lp ++r +a++s+vy+A+ar+++ G++g i PSME_00054149-RA 24 KQKECLENCSLLYQFTSNDIHKFTILQQVFGACNVVKLTQDLPSNQRVEAIDSMVYKANARLENLAFGCTGKI 96 4679******************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.678	16	97	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-17	24	96	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MQIMSNSEEK TSIGADVADS KIQKQKECLE NCSLLYQFTS NDIHKFTILQ QVFGACNVVK 60 LTQDLPSNQR VEAIDSMVYK ANARLENLAF GCTGKIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P1U3	2e-29	A9P1U3_PICSI; Uncharacterized protein
STRING	XP_010669677.1	4e-19	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-21	LOB domain-containing protein 1