PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054211-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 257aa    MW: 28232.9 Da    PI: 6.7146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054211-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.3e-12157199754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N++++ Lr+++Pk       K +  +iL  AveY+k+L
  PSME_00054211-RA 157 MAERRRRKKVNDRLFMLRSVVPKV-----SKTDRTSILGDAVEYLKEL 199
                       79*********************6.....49***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-14149211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.513150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10156199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-13157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-10157203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEMAWTGLLD ESFSSFRAIL NGGGEYDFYS TMDANEMALE ALLGSSLMCP DGSVLSNVQT  60
ETIDAFHHMD CSITTIAEML EHPNQGSDEL GLLQRRAEIE SGFHKNEGSH KLNGMVDGSR  120
GNASHAANNN NNNGYASAAS VGRGRGRKTG LPAKNLMAER RRRKKVNDRL FMLRSVVPKV  180
SKTDRTSILG DAVEYLKELL QRINGLHIEL MSGSSNSKPL ASTLLDFPCI MNREYHASLL  240
NPEVEPVRVR LPSCSIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-29bHLH family protein