PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054258-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 206aa    MW: 22438.8 Da    PI: 6.0873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054258-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-141171591256
               AP2  12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       rg+++AeIrdp +ng  +r++lg+f taeeAa a+++a+ +++g+
  PSME_00054258-RA 117 RGKFAAEIRDPGKNG--ARIWLGTFNTAEEAALAYDRAAFRIRGA 159
                       69********97776..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.151104166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-23117166IPR001471AP2/ERF domain
PfamPF008471.2E-8117158IPR001471AP2/ERF domain
SMARTSM003803.0E-23117172IPR001471AP2/ERF domain
CDDcd000186.30E-22118166No hitNo description
SuperFamilySSF541718.5E-18118167IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNQSEGYCEF VTEWPETRKN VAINMFNMLE FIRHHLLEVE EADNIDHIIH HNATAISLTG  60
GENDDIQANA AATATWSSAQ NSSSSSTSQH TEIVFTQQLS SSSSVLGTVI RSAEAVRGKF  120
AAEIRDPGKN GARIWLGTFN TAEEAALAYD RAAFRIRGAK ALVNFPLAFA DHAEYGPAVD  180
HMAYKRKRRN GGGAAGVESE GEAIRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-241181671261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-241181671564ATERF1
3gcc_A2e-241181671564ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0824031e-47EF082403.1 Picea sitchensis clone WS0282_K22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ79e-41A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-17ethylene responsive element binding factor 5