PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00054308-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 239aa MW: 26349.3 Da PI: 6.2232

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00054308-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.9	1.4e-37	7	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++e+ + +fa++hk+FGasn +kll +lp e+r++a+ s++yeAear++dPvyG+v++i +lqqq+++lk PSME_00054308-RA 7 PCGACKFLRRKCVKGCVFAPYFCSEEmgAPRFAAIHKVFGASNFSKLLMHLPVEHRDNAVVSVLYEAEARLQDPVYGCVSHIYALQQQVANLK 99 7*********************995569************************************************************9 PP DUF260 92 aelal 96 +la+ PSME_00054308-RA 100 GNLAA 104 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.413	6	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-36	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MRGGGAPCGA CKFLRRKCVK GCVFAPYFCS EEMGAPRFAA IHKVFGASNF SKLLMHLPVE 60 HRDNAVVSVL YEAEARLQDP VYGCVSHIYA LQQQVANLKG NLAAGYAQLA DCIHSDGSSL 120 NPAVHDQYDQ QSEMPSLTSS SNGSSPSPYD KQYLNAWGVP QQIPSDNVKI NNYNEEAGDD 180 KGLWSSYSVC MEGSTHPMST AQGTHVFQNG ERFSEQRHLD NNENGDLEDL VWAILRRNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-38	3	109	7	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-38	3	109	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G9H1E5	6e-52	A0A2G9H1E5_9LAMI; Uncharacterized protein
STRING	GSMUA_Achr4P25190_001	2e-52	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	3e-50	LBD family protein