PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054338-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 255aa    MW: 28620.8 Da    PI: 9.7679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054338-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08130155227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       k   C  + ++GtC++Gd+C+F Hgp
  PSME_00054338-RA 130 KPFVCYQWEANGTCSFGDNCRFPHGP 155
                       5568******************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.06E-54072IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.7234268IPR000571Zinc finger, CCCH-type
SMARTSM003560.184267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-104273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-8124155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7126157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765128156IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5128155IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6130155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDPQPERGIS ENSEKRNNEF DGSGREEIGH GAFAAERRNV HLHKTQICFK FTAGKCNFKS  60
CRFAHGREEL RQPFRNVQRI SAEDEQESHR TRNAKRLRGD DSAPRDSEAI SVATTSGSSE  120
GVLQRPNFKK PFVCYQWEAN GTCSFGDNCR FPHGPRKLAD SLEGLKNGES ATSNWKQGIS  180
NMRSQSVFKQ GGSPPKLQTQ NVDRVTGKKA FVVPIEKPME INGGPTQAQP GKKGPATWKW  240
PQKISRIYGD WIDEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.15e-24C3H family protein