PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00054393-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 256aa MW: 29363.4 Da PI: 9.5943

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00054393-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.4e-07	189	231	5	51
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYI 51 h +Er+RR+++ + f+ Lr+l+P + K a++L ++ +Y+ PSME_00054393-RA 189 HVVAERKRREQMSDIFSALRSLVPVkP------KnAGRATVLLQTKDYV 231 8899********************944......3366666777776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-13	184	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.131	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.17E-8	188	239	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.1E-13	188	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-5	189	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-6	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSSPRASPRL LFDDIYKTSL EPIDRNIVDG YNVCEPYFMD PMTDWQANSF KPVAPDYHYD 60 CLLPPSSNDL LLSDILLESQ TRIDNGKPSL HLEEPNISVS TEGIHGNWKG LGSSFIKKRT 120 SAFMEWKAIN PDPSRSCKRK KYSSLQKRCI RFLNDINNHK IPRELGYNNN SSNASKAVSN 180 NYDKLAIHHV VAERKRREQM SDIFSALRSL VPVKPKNAGR ATVLLQTKDY VIDLKKNIEQ 240 LEQRNRELEA LVRQKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	197	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	3e-09	bHLH family protein