PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054400-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 183aa    MW: 20093.5 Da    PI: 5.497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054400-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.34.1e-41131131101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C ++Cvlapyfp ++p+kfa vh++FGasn++++l+++  e+r+da+ss+vyeA+a +rdPvyG++gv+  lqqq++ l+++
  PSME_00054400-RA  13 PCAACKTLRRRCGDECVLAPYFPPDDPHKFATVHRVFGASNIIRILQDVASEHRDDAVSSMVYEARATLRDPVYGCAGVVCLLQQQVSDLQSQ 105
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la +++++
  PSME_00054400-RA 106 LAIAQAQI 113
                       ***99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.03812113IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-4113110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSEGNGRTRV ATPCAACKTL RRRCGDECVL APYFPPDDPH KFATVHRVFG ASNIIRILQD  60
VASEHRDDAV SSMVYEARAT LRDPVYGCAG VVCLLQQQVS DLQSQLAIAQ AQIFNLHCQQ  120
TNLLAFLRAS NSSFGIGGET GDYHDYDEPL GSSWTDSPGS QVIDGENHVL LQEMFLQCSH  180
YGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-391311811116LOB family transfactor Ramosa2.1
5ly0_B3e-391311811116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022875086.19e-58LOB domain-containing protein 1-like
SwissprotQ9LQR07e-51LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2Z7BKX01e-56A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
STRINGSolyc11g072470.1.17e-57(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-42LOB domain-containing protein 1