PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054525-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 66aa    MW: 7336.2 Da    PI: 4.8547
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054525-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.1e-102561338
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCT CS
          Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkklg 38
                      +R+++t++++++L+el++   r+p+ e++++++++l+
  PSME_00054525-RA 25 SRWNPTADEVTILKELYRGgMRTPTSEQIQQISSQLR 61
                      7*****************99***************95 PP
2Wus_type_Homeobox59.29.8e-202466345
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGki 45
                        +RW+Pt++ ++iL+ely+ G+rtP++e+iq+i+++L+ yGki
   PSME_00054525-RA 24 GSRWNPTADEVTILKELYRGGMRTPTSEQIQQISSQLRCYGKI 66
                       68***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.8E-72561IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MNNASSSPEN EGSMLMITDQ PTSGSRWNPT ADEVTILKEL YRGGMRTPTS EQIQQISSQL  60
RCYGKI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4119492e-59JX411949.1 Picea abies WUSCHEL homeobox protein WOX5 (WOX5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598895.13e-14WUSCHEL-related homeobox 1-like
TrEMBLR9R8K49e-29R9R8K4_PICAB; WUSCHEL homeobox protein WOX5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-16WUSCHEL related homeobox 1