PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054571-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 296aa    MW: 33191.1 Da    PI: 6.2923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054571-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.8e-13131181255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r +  +g+++ eIrd    g + +r++l++f taeeAa a+++ ++ ++g
  PSME_00054571-RA 131 RYRGLRKHL-WGKFATEIRDS---GrRGARVWLETFKTAEEAAMAYDKVALLIRG 181
                       7*****998.**********4...5444********************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-23130190No hitNo description
Gene3DG3DSA:3.30.730.102.1E-24131189IPR001471AP2/ERF domain
PfamPF008471.1E-8131180IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-16131191IPR016177DNA-binding domain
SMARTSM003809.7E-26131195IPR001471AP2/ERF domain
PROSITE profilePS5103219.836131189IPR001471AP2/ERF domain
PRINTSPR003671.7E-7132143IPR001471AP2/ERF domain
PRINTSPR003671.7E-7155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
SPNNAEGSYQ HEHGPVVSAE RILEDVWAHF IAARKSDQPI HDGLQPANHT KEESCCNVED  60
QDQDQENDSE DMILFQLLNE PAANLGWTAI HNQQEMAIPG ATGSTTYTPA IYNTKMTWAQ  120
GEAAERPSTK RYRGLRKHLW GKFATEIRDS GRRGARVWLE TFKTAEEAAM AYDKVALLIR  180
GTRASLNFPI EVVTNALENT TEKWSSKLIS SRQKQKHIKV SHHHIELRKK MDAPDAGSTI  240
GVDFSKDDGM SSMSQKIRSS DDIRRVDFVL ESPPPEKRFI CSAASGLVNE TEIIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22130192163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.18e-25ERF family protein