PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054601-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 104aa    MW: 12010.5 Da    PI: 10.3469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054601-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-077331948
                      TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                      lG++ W++Ia  ++ +Rt+ ++k++w++++
  PSME_00054601-RA  7 LGNK-WSLIAGILP-RRTD-EIKNHWNTHM 33
                      8999.*********.****.*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.214137IPR017930Myb domain
SuperFamilySSF466891.88E-6646IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-10747IPR009057Homeodomain-like
CDDcd001670.00111933No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSRSSSLGNK WSLIAGILPR RTDEIKNHWN THMKKKLVRR GFEPQSHIPL SQPNNNNTTC  60
TSVPVAKHEI REPADVFEYD RSESSRNQRV ACKAEEHPEL SKKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022719791.19e-18transcription repressor MYB6-like
TrEMBLB1PPT91e-35B1PPT9_PINPS; R2R3-Myb14 transcription factor (Fragment)
STRINGGorai.009G288900.19e-17(Gossypium raimondii)
STRINGGorai.013G139200.11e-16(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-17myb domain protein 5