PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054696-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 232aa    MW: 26260.7 Da    PI: 8.7357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054696-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.1e-08443952
               AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                      ++ +gr++AeI+dp++   + r +lg+++taeeA   ++ a+++
  PSME_00054696-RA  4 RP-WGRFAAEICDPKT---KERRWLGTYDTAEEAPCTYDFAARA 43
                      56.**********954...4999***********7777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.382154IPR001471AP2/ERF domain
SMARTSM003803.5E-15260IPR001471AP2/ERF domain
CDDcd000181.18E-19253No hitNo description
SuperFamilySSF541712.42E-13354IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-19353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVKRPWGRFA AEICDPKTKE RRWLGTYDTA EEAPCTYDFA ARAMSRIKAR TNFIYLNSEH  60
CMLSTPTPPE SLTGSTFPTN IKDPFSHKPQ KLQDSWLDCL WRDSSTTRPR PCDEAKQWQQ  120
KQQFSVNGGY NMLGRTVSSW RPSNNEIENN NNQLLAGAGS SSVVPVSLPR DQHSINASTW  180
QSLPLADPLL LSLSINTIYH TQTLSFHPQF LHPPFVPQLQ KSLIISLPST TI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-23DORNROSCHEN-like