PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00054703-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 229aa MW: 25156.9 Da PI: 6.2243

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00054703-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.6	7.3e-37	7	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++++ + +f ++hk+FGasn +kll +lp e+r++a+ s++yeAe r++dPvyG+v++i +lqqq+++lk PSME_00054703-RA 7 PCGACKFLRRKCVKGCVFAPYFCSDEmgAPRFGAIHKVFGASNFSKLLMHLPVEHRDNAVVSVLYEAETRLQDPVYGCVSHIYALQQQVANLK 99 7*********************995569************************************************************9 PP DUF260 92 aelal 96 +la+ PSME_00054703-RA 100 GKLAA 104 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.998	6	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-35	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MGGGGAPCGA CKFLRRKCVK GCVFAPYFCS DEMGAPRFGA IHKVFGASNF SKLLMHLPVE 60 HRDNAVVSVL YEAETRLQDP VYGCVSHIYA LQQQVANLKG KLAAGYAQLA DCSHSDASSL 120 NRAHDQYDQQ SEMPSLTSNS NSSSPSPSDE HYLNAWGVPQ QIPLDNVAIN NYNEEAGNDK 180 GLRSTHPVST AQETHVFQNG ERFSEQRQLD NNENGDLEDL VLAILRRNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	3	109	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	3	109	7	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	4e-49	LBD family protein