PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054758-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 161aa    MW: 18356.8 Da    PI: 6.9604
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054758-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0748104255
                       HHHHHH.HHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahne.rErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55 
                       r+++n  +Er+RR ++++ + +Lr+++Pk +      +  +K +i+  A+ Y+ +Lq
  PSME_00054758-RA  48 RTSKNLyIERKRRMKLKETLLNLRSVVPKiSKiVYAFEQIDKQSIVGDAISYVLDLQ 104
                       55555339*********************66564444669999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-1238117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1146119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-746108No hitNo description
PROSITE profilePS5088812.22747103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-448104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDHQNWMDMD KNSGQFEWDE TDPEIIGSNP AATQAFNSNS GVVVQQRRTS KNLYIERKRR  60
MKLKETLLNL RSVVPKISKI VYAFEQIDKQ SIVGDAISYV LDLQKKVQEI QDEIKVLSTS  120
NKPDHHTQLT AETIESLTNA DCASSMKNLP DKLVKHGKIL E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN63e-39B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-14bHLH family protein