PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054855-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 268aa    MW: 29588.2 Da    PI: 8.63
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054855-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.73.6e-28298192
            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
                      +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++l++++pe+ r+ +++sl+yeA+ r+ +PvyG+vg+++++++  +q+
  PSME_00054855-RA  2 SCNGCRVLRKGCSDSCILRPCLhwistAESQANATVFLAKFYGRAGLTNLISSAPEHLRPGTFRSLLYEACGRMLNPVYGSVGLLWSGNWAECQA 96
                      6*********************9999778899**********************************************************99987 PP

            DUF260 91 ka 92
                       +
  PSME_00054855-RA 97 GV 98
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.861107IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-23296IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCILR PCLHWISTAE SQANATVFLA KFYGRAGLTN LISSAPEHLR  60
PGTFRSLLYE ACGRMLNPVY GSVGLLWSGN WAECQAGVDS ILRGSFRAVP DGNFLYPDRQ  120
DTLPKKAIAI PQLRRSVKAR GRLKGFSHAK PKPKERERAP NRNHIHSISG ISNYGGDSRN  180
AGKTSDNGNF DDKWMENYFT FNSDYFTFNS GKEHDEFVPS NQEEMEYGRD LCNFKTSEPE  240
AVACNTVGLE LTLGSQGSTS PAVKLSSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-59LOB domain-containing protein 40