PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054865-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 280aa    MW: 30810.6 Da    PI: 9.5588
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054865-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-09854347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +W+ +  +l+ +a +++ ++   +W+ +a+ ++ g+++ ++k ++  +
  PSME_00054865-RA  8 PWSLDQNKLFENALARYDKDtpdRWENVASLVP-GKSPAEVKKHYKLL 54
                      8********************************.***********876 PP
2Myb_DNA-binding46.11.1e-14114158347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  PSME_00054865-RA 114 PWTEEEHRLFLMGLNKYGKGDWRSISRNFVVSRTPTQVASHAQKY 158
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.28457IPR017884SANT domain
SMARTSM007171.9E-8557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-4756IPR009057Homeodomain-like
SuperFamilySSF466894.76E-12762IPR009057Homeodomain-like
CDDcd001671.46E-7855No hitNo description
PfamPF002498.8E-7854IPR001005SANT/Myb domain
PROSITE profilePS5129419.5107163IPR017930Myb domain
SuperFamilySSF466891.36E-17108163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-18110161IPR006447Myb domain, plants
SMARTSM007171.2E-12111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12111157IPR009057Homeodomain-like
PfamPF002492.4E-12114158IPR001005SANT/Myb domain
CDDcd001674.19E-11114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKVEEDSPWS LDQNKLFENA LARYDKDTPD RWENVASLVP GKSPAEVKKH YKLLLDDVTV  60
IEAGQVALPA YSENSYTPPE WISDQSGDFT KQQTVSVKVP SAKASEQERK KGVPWTEEEH  120
RLFLMGLNKY GKGDWRSISR NFVVSRTPTQ VASHAQKYFL RLSSGNKEKK RSSIHDITSV  180
NGAEMKQTHL QQSSTITNSQ NPAVVSRSSS MMYPQSLGGG ATMVNSMGSP TGGNHMMLPS  240
HSLGPYSQKG IGGHSPGHLI PVSSLGVPQV GYPMQPTMHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-218711073RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4449656e-69JQ444965.1 Abies alba isolate AcesapA02 anonymous locus CL4417Contig1_03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8S9H72e-70DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D6R2Q11e-121A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGXP_008370064.12e-73(Malus domestica)
STRINGcassava4.1_012254m2e-73(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-68Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]