PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00054965-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 259aa    MW: 28366.3 Da    PI: 8.2109
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00054965-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.95.7e-274103195
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++Cvl+p++     +++q+++  ++ k++G++ +++l+++ pe+ r+++++sl+y A+ r+ +P+yG+vg++ ++++ l+
  PSME_00054965-RA   4 SCNGCRVLRKGCSDSCVLRPCLewirtAESQANAIVFLVKFYGRAGLTNLISNGPEHLRPAIFRSLLYDACGRMVNPIYGSVGLLCSGNWALC 96 
                       6*********************9999778899************************************************************9 PP

            DUF260  89 qlkaela 95 
                       ++  e +
  PSME_00054965-RA  97 EAGLESV 103
                       9876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.693109IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-22499IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDSCV LRPCLEWIRT AESQANAIVF LVKFYGRAGL TNLISNGPEH  60
LRPAIFRSLL YDACGRMVNP IYGSVGLLCS GNWALCEAGL ESVLQGSFST DTQGNFPSHI  120
VPVRAMAIRK LYRSVKARGR FKGFTHSKPR QKEHDHALVY SDMDSGSKSD DLGNVTNTLQ  180
KAADNSKFNE KCVEKYSTFL SGKELDEFVA THQAQIESFH DLCNVGSSIQ TEGSVCNAVG  240
LELTLGSQSF TSPVTPPLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-60LOB domain-containing protein 40