PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00055155-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 385aa MW: 43335.4 Da PI: 6.4573

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00055155-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.1e-06	222	241	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C Cgk+F+r n++ H+ PSME_00055155-RA 222 FSCAVCGKTFNRYNNMQMHM 241 89*****************9 PP
2	zf-C2H2	12	0.00065	306	328	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ PSME_00055155-RA 306 FACRKCSKAFAVRGDWRTHEKNC 328 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.8E-5	215	244	No hit	No description
PROSITE profile	PS50157	10.887	222	249	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.9E-5	222	241	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.22	222	244	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	224	244	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.03E-5	292	326	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.3E-5	293	326	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	78	306	326	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MQRKRPLEME TMMKSGSYQY SQSSMAVPPS IYFHRLPLGE WMNPLYVMDP SVSQLPSGIP 60 FFYDHGIVSL NNQADSVKSS LLHMSCHPAV STMIPRTAVD QELQDIEEEE HQEDQEEEEP 120 FLSLRPPGQT EAAIKNNSTS SSSHPSSYIT DQDDSDDNVT VALHIGLPNS ELRECRNEGA 180 GEYNDAVSMS PDDGCFQTAQ KLAEGQYWIP TPAQILVGPT QFSCAVCGKT FNRYNNMQMH 240 MWGHGSQYRK GPDSLRGTKP SAILRLPCYC CAPGCRNNIH HPRSKPLKDF RTLQTHYKRK 300 HGIKPFACRK CSKAFAVRGD WRTHEKNCGK LWFCTCGSDF KHKRSLKDHI RAFGNGHAPH 360 GVETCEDDDD TPSEEVDDEY SAGSH

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MQRKRPLEME TMMKSGSYQY SQSSMAVPPS IYFHRLPLGE WMNPLYVMDP SVSQLPSGIP  60
FFYDHGIVSL NNQADSVKSS LLHMSCHPAV STMIPRTAVD QELQDIEEEE HQEDQEEEEP  120
FLSLRPPGQT EAAIKNNSTS SSSHPSSYIT DQDDSDDNVT VALHIGLPNS ELRECRNEGA  180
GEYNDAVSMS PDDGCFQTAQ KLAEGQYWIP TPAQILVGPT QFSCAVCGKT FNRYNNMQMH  240
MWGHGSQYRK GPDSLRGTKP SAILRLPCYC CAPGCRNNIH HPRSKPLKDF RTLQTHYKRK  300
HGIKPFACRK CSKAFAVRGD WRTHEKNCGK LWFCTCGSDF KHKRSLKDHI RAFGNGHAPH  360
GVETCEDDDD TPSEEVDDEY SAGSH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385058.1	1e-131	zinc finger protein WIP6-like
Refseq	XP_024385059.1	1e-131	zinc finger protein WIP6-like
Swissprot	Q9SVY1	1e-113	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2K1K471	1e-130	A0A2K1K471_PHYPA; Uncharacterized protein
STRING	PP1S359_44V6.1	1e-131	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-112	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]