PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055171-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 286aa    MW: 32781.3 Da    PI: 9.6039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055171-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.1e-07191216530
                       HHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                       h  +Er+RR+++ + f+ Lr l+P  
  PSME_00055171-RA 191 HVVAERKRREQMSELFSDLRALVPVK 216
                       8899********************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.82E-7186217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-5190216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-5190220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MFSPTSSPNM LLDDIYKTSL EAIDRNTIDD YNVYGIDFMD PLTDWQVDSF ESVAADYLSG  60
CFSPPSFNDL ALSDHLLHIQ TGLDSIAHTS VQLEKTVILV SNEDQIESNS KGLGFSFDKK  120
RKSAFVEWKA NEPKLRRSCK PPKKSSLQKR CIRFLNDINN HRIPRPLSFT NNSAYRSLAF  180
SNSYDKLAIH HVVAERKRRE QMSELFSDLR ALVPVKPKVT FFGNKCRKGY SASSNKRLRD  240
SFEEQCTTVG AKESRVRSII IPEIIIPVYR QFPNLIYFHQ RNGKRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-