PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055376-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 192aa    MW: 21452.3 Da    PI: 6.6532
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055376-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-39341331100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk +r+kC+k+Cvlapyfp+++p+kf+ vh lFG+ +v+k l++lp e+r da+ss+vyeA  r rdPv G+vgvi++lq+++++l+++
  PSME_00055376-RA  34 PCAACKNQRKKCTKKCVLAPYFPQDDPQKFRLVHSLFGNGHVIKSLQKLPAEKRGDAVSSMVYEASERNRDPVLGCVGVINDLQNKVAELQSQ 126
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00055376-RA 127 LASTQAE 133
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.19833134IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3834131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLGETNDKIY AKYTIVLQMS DVTSSKPDDS SRTPCAACKN QRKKCTKKCV LAPYFPQDDP  60
QKFRLVHSLF GNGHVIKSLQ KLPAEKRGDA VSSMVYEASE RNRDPVLGCV GVINDLQNKV  120
AELQSQLAST QAEVANISQQ HANLLTIFTG SHEPCSHPNF YCVSPRDSVD TDMSQPVLEY  180
VDNLPLWELF WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-32301347111LOB family transfactor Ramosa2.1
5ly0_B5e-32301347111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015486.26e-46PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR08e-42LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI99e-68B8LQI9_PICSI; Uncharacterized protein
STRINGEOY331052e-45(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-44LOB domain-containing protein 1