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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00055483-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | SAP | ||||||||
| Protein Properties | Length: 490aa MW: 53679.7 Da PI: 5.1298 | ||||||||
| Description | SAP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SAP | 425.8 | 4.1e-130 | 39 | 488 | 13 | 452 |
SAP 13 eegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWrrtk 105
+e+s++ + a s+e + + r+ + +vwpePf+eala+ va++a+r+ G la +a++nvfqvc twravs s++lw+ l + +W++ +
PSME_00055483-RA 39 GESSTRRS--RARSQEAYVSVEARNDQNGGVWPEPFIEALAQAVALEAARTGGALAVGPAVVNVFQVCCTWRAVSHSEMLWKALMHSVWDQHD 129
33332222..23334444566667778889************************************************************996 PP
SAP 106 llr.dtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrf 197
+ r + Wr+ yi hrta+nfr++r +y+ ++d + d++ + + Crclals yla Gf dGavr+f l+++ ++t+ + ++rlG +
PSME_00055483-RA 130 RERsESWRNRYIRLHRTASNFRRNRAKYTAIEYDVS-SDSNSNGNGTACRCLALSPDYLAGGFFDGAVRIFCLTSKDCIRTMNAGDQNRLGSL 221
655389*****************************8.566667799*********************************************** PP
SAP 198 sravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPe 290
s+a++Giv+ + ++vfa++ G i+v i + r a+ G+v +dG+lvdf+G++rWwvGlyaG++G+a hiWdaeteelvf GG +tdP+
PSME_00055483-RA 222 SQAIAGIVLHQDKVVFASFYGSIFVGSISR---GDVRCAHPGNVRDDGTLVDFTGCDRWWVGLYAGISGHACHIWDAETEELVFNGGNITDPD 311
****************************98...689********************************************************* PP
SAP 291 avmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenleevcrfrv 382
a++GW mlte +e +Grv++ ++ + t+l++ v+dl +g+v+ ee + G+iv s+d++ + ++++ + G+a+vr++ +le+v f
PSME_00055483-RA 312 ALRGWRMLTEQAERIGRVKIGGEGLLLLATRLKVEVIDLETHGIVFSVEEATdDGIIVESVDVNRDRFLAASNDGNARVRQIRTLENVWAFPF 404
*********************************************997666669***********************************9976 PP
SAP 383 rg...............aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldf 452
g r++lg +n+ a v++ g + +W+ ++ + +y l e++g+v lvadd hva ++ d+ ihl+ f
PSME_00055483-RA 405 DGlgaaddnssgsnyshNYRKILGTLNTWLAFVCIDGAVHAWDSNSGA-RIYRLVEQIGDVLDLVADDEHVAGCAVDNGIHLWSF 488
43322111111122323469***********************99976.9*********************************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF81383 | 1.05E-6 | 97 | 146 | IPR001810 | F-box domain |
| Gene3D | G3DSA:1.20.1280.50 | 7.2E-8 | 98 | 154 | No hit | No description |
| Gene3D | G3DSA:2.130.10.10 | 9.0E-17 | 171 | 304 | IPR015943 | WD40/YVTN repeat-like-containing domain |
| SuperFamily | SSF50978 | 8.06E-16 | 172 | 306 | IPR017986 | WD40-repeat-containing domain |
| SuperFamily | SSF50978 | 8.06E-16 | 359 | 487 | IPR017986 | WD40-repeat-containing domain |
| Gene3D | G3DSA:2.130.10.10 | 9.0E-17 | 363 | 488 | IPR015943 | WD40/YVTN repeat-like-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009554 | Biological Process | megasporogenesis | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0030163 | Biological Process | protein catabolic process | ||||
| GO:0046622 | Biological Process | positive regulation of organ growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 490 aa Download sequence Send to blast |
MSSQVPGSEK GQGAASAQTL AQEEDEIPVE RGGYSGERGE SSTRRSRARS QEAYVSVEAR 60 NDQNGGVWPE PFIEALAQAV ALEAARTGGA LAVGPAVVNV FQVCCTWRAV SHSEMLWKAL 120 MHSVWDQHDR ERSESWRNRY IRLHRTASNF RRNRAKYTAI EYDVSSDSNS NGNGTACRCL 180 ALSPDYLAGG FFDGAVRIFC LTSKDCIRTM NAGDQNRLGS LSQAIAGIVL HQDKVVFASF 240 YGSIFVGSIS RGDVRCAHPG NVRDDGTLVD FTGCDRWWVG LYAGISGHAC HIWDAETEEL 300 VFNGGNITDP DALRGWRMLT EQAERIGRVK IGGEGLLLLA TRLKVEVIDL ETHGIVFSVE 360 EATDDGIIVE SVDVNRDRFL AASNDGNARV RQIRTLENVW AFPFDGLGAA DDNSSGSNYS 420 HNYRKILGTL NTWLAFVCID GAVHAWDSNS GARIYRLVEQ IGDVLDLVAD DEHVAGCAVD 480 NGIHLWSFRP |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT124189 | 1e-117 | BT124189.1 Picea sitchensis clone WS04720_I09 unknown mRNA. | |||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G35770.1 | 2e-94 | SAP family protein | ||||




