PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055483-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SAP
Protein Properties Length: 490aa    MW: 53679.7 Da    PI: 5.1298
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055483-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP425.84.1e-1303948813452
               SAP  13 eegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWrrtk 105
                       +e+s++ +   a s+e   + + r+ +  +vwpePf+eala+ va++a+r+ G la  +a++nvfqvc twravs s++lw+ l + +W++ +
  PSME_00055483-RA  39 GESSTRRS--RARSQEAYVSVEARNDQNGGVWPEPFIEALAQAVALEAARTGGALAVGPAVVNVFQVCCTWRAVSHSEMLWKALMHSVWDQHD 129
                       33332222..23334444566667778889************************************************************996 PP

               SAP 106 llr.dtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrf 197
                       + r + Wr+ yi  hrta+nfr++r +y+  ++d +  d++ + +   Crclals  yla Gf dGavr+f l+++  ++t+ +  ++rlG +
  PSME_00055483-RA 130 RERsESWRNRYIRLHRTASNFRRNRAKYTAIEYDVS-SDSNSNGNGTACRCLALSPDYLAGGFFDGAVRIFCLTSKDCIRTMNAGDQNRLGSL 221
                       655389*****************************8.566667799*********************************************** PP

               SAP 198 sravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPe 290
                       s+a++Giv+ + ++vfa++ G i+v  i     +  r a+ G+v +dG+lvdf+G++rWwvGlyaG++G+a hiWdaeteelvf GG +tdP+
  PSME_00055483-RA 222 SQAIAGIVLHQDKVVFASFYGSIFVGSISR---GDVRCAHPGNVRDDGTLVDFTGCDRWWVGLYAGISGHACHIWDAETEELVFNGGNITDPD 311
                       ****************************98...689********************************************************* PP

               SAP 291 avmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvvdsrGvatvrrvenleevcrfrv 382
                       a++GW mlte +e +Grv++ ++   +  t+l++ v+dl  +g+v+  ee +  G+iv s+d++ + ++++ + G+a+vr++ +le+v  f  
  PSME_00055483-RA 312 ALRGWRMLTEQAERIGRVKIGGEGLLLLATRLKVEVIDLETHGIVFSVEEATdDGIIVESVDVNRDRFLAASNDGNARVRQIRTLENVWAFPF 404
                       *********************************************997666669***********************************9976 PP

               SAP 383 rg...............aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldf 452
                        g                 r++lg +n+  a v++ g + +W+ ++ +  +y l e++g+v  lvadd hva ++ d+ ihl+ f
  PSME_00055483-RA 405 DGlgaaddnssgsnyshNYRKILGTLNTWLAFVCIDGAVHAWDSNSGA-RIYRLVEQIGDVLDLVADDEHVAGCAVDNGIHLWSF 488
                       43322111111122323469***********************99976.9*********************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.05E-697146IPR001810F-box domain
Gene3DG3DSA:1.20.1280.507.2E-898154No hitNo description
Gene3DG3DSA:2.130.10.109.0E-17171304IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509788.06E-16172306IPR017986WD40-repeat-containing domain
SuperFamilySSF509788.06E-16359487IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.109.0E-17363488IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSSQVPGSEK GQGAASAQTL AQEEDEIPVE RGGYSGERGE SSTRRSRARS QEAYVSVEAR  60
NDQNGGVWPE PFIEALAQAV ALEAARTGGA LAVGPAVVNV FQVCCTWRAV SHSEMLWKAL  120
MHSVWDQHDR ERSESWRNRY IRLHRTASNF RRNRAKYTAI EYDVSSDSNS NGNGTACRCL  180
ALSPDYLAGG FFDGAVRIFC LTSKDCIRTM NAGDQNRLGS LSQAIAGIVL HQDKVVFASF  240
YGSIFVGSIS RGDVRCAHPG NVRDDGTLVD FTGCDRWWVG LYAGISGHAC HIWDAETEEL  300
VFNGGNITDP DALRGWRMLT EQAERIGRVK IGGEGLLLLA TRLKVEVIDL ETHGIVFSVE  360
EATDDGIIVE SVDVNRDRFL AASNDGNARV RQIRTLENVW AFPFDGLGAA DDNSSGSNYS  420
HNYRKILGTL NTWLAFVCID GAVHAWDSNS GARIYRLVEQ IGDVLDLVAD DEHVAGCAVD  480
NGIHLWSFRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1241891e-117BT124189.1 Picea sitchensis clone WS04720_I09 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.12e-94SAP family protein