PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00055494-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 163aa MW: 18336 Da PI: 5.0115

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00055494-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.5	1.6e-36	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+ ++kC+++C+lap fp+++p++f v ++FG++ ++kll+++p+++r da+ss+vyeA+ r+rdPv+G++gvi +lq+++++l+++ PSME_00055494-RA 16 RCAGCKIRKKKCSEKCMLAPFFPQDDPQRFLLVSRVFGNACIVKLLQSIPTKDRGDAVSSMVYEANQRLRDPVHGCLGVIDDLQKKVAELQSQ 108 6******************************************************************************************** PP DUF260 94 lallkee 100 l+++++e PSME_00055494-RA 109 LDSREAE 115 *988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.159	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-35	16	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDNTTSLTDT VAASTRCAGC KIRKKKCSEK CMLAPFFPQD DPQRFLLVSR VFGNACIVKL 60 LQSIPTKDRG DAVSSMVYEA NQRLRDPVHG CLGVIDDLQK KVAELQSQLD SREAELANMN 120 IQHANLLTLI TRGHEGCDPF FYDASLQEIE DMDVDKLWEP LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-32	10	116	5	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-32	10	116	5	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836460.1	1e-47	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_021618102.1	1e-47	LOB domain-containing protein 1-like
TrEMBL	B8LQI9	2e-65	B8LQI9_PICSI; Uncharacterized protein
STRING	cassava4.1_021199m	4e-47	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-46	LOB domain-containing protein 1