PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055510-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 265aa    MW: 29356.6 Da    PI: 4.23
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055510-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.5e-162271255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p+    +  r++lg+++t+e+Aa+a++ a  +l+g
  PSME_00055510-RA 22 QFKGIRMRK-WGKWVSEIRMPN----StGRIWLGSYDTPEKAARAYDFAVYYLRG 71
                      69*****99.**********93....259******************99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-282180IPR001471AP2/ERF domain
CDDcd000182.29E-262281No hitNo description
PROSITE profilePS5103221.2192279IPR001471AP2/ERF domain
SMARTSM003808.0E-312285IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-192280IPR016177DNA-binding domain
PRINTSPR003672.2E-82334IPR001471AP2/ERF domain
PfamPF008472.0E-92371IPR001471AP2/ERF domain
PRINTSPR003672.2E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MATPLSQNDH GRPESPSQKS RQFKGIRMRK WGKWVSEIRM PNSTGRIWLG SYDTPEKAAR  60
AYDFAVYYLR GSKAKLNFPD TPPEIPCNSN LSPQQIQATA AKFAAGEFRL PLDDGAACSS  120
SNLEAKCDIG HQQITVEQSP ASWDLLSLEG LDYCDYPSFE DFSPLDFPVA FSEIPCSSNL  180
SPQQIQATAA KFPAGEFRLP SDDGAACSSS NLEVKCDIER QQITAEQSPA SWDLLSLDGL  240
DYCDSPSLED FPPLDFPVED FQYPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-161979263ATERF1
3gcc_A3e-161979263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPP69e-62B8LPP6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-37ERF family protein