PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00055544-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 182aa MW: 20728.6 Da PI: 7.9346

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00055544-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	334.4	6.1e-103	2	175	44	217
VOZ 44 pgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrg 136 pg++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna elfd+ +lege++rewlffdkprr fesgnrkqrslpdysgrg PSME_00055544-RA 2 PGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAYELFDIYVLEGESMREWLFFDKPRRDFESGNRKQRSLPDYSGRG 94 9****************************************************************************************** PP VOZ 137 whesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 whesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrlelk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00055544-RA 95 WHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLELKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 175 *****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
APGMRPVLRP GGIDLKDGPL FAALSAKTQE KAVGIPECEG AATAKSPWNA YELFDIYVLE 60 GESMREWLFF DKPRRDFESG NRKQRSLPDY SGRGWHESRK QVIKDFGGLK RSYYMDPQPS 120 TQFEWHLYEY EINDCDACAL YRLELKMVCS KKNTKGKVGG DPLVDLQHQL GKLSAEFSWV 180 AK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916038.1	1e-102	transcription factor VOZ1 isoform X1
Swissprot	Q9SGQ0	6e-97	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0K9NP50	1e-102	A0A0K9NP50_ZOSMR; Vascular plant one zinc finger protein
STRING	ERN14021	1e-102	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	2e-99	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]