PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055706-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 252aa    MW: 27774.2 Da    PI: 6.7585
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055706-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.32e-367102194
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +C aCk+lrrkC+k+Cv+apyf++e+  +++f ++hk+FGasn +kll +lp ++r da+ s++yeAear++dPvyG+v++i +lqqq++ lk
  PSME_00055706-RA   7 PCGACKFLRRKCVKGCVFAPYFCSEEmeASHFGAIHKVFGASNFSKLLMQLPVQQRYDAVLSVLYEAEARLQDPVYGCVSHIYALQQQVAYLK 99 
                       7*********************99885469***********************************************************9998 PP

            DUF260  92 ael 94 
                        +l
  PSME_00055706-RA 100 GKL 102
                       766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.9986109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-357102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGGEGAPCGA CKFLRRKCVK GCVFAPYFCS EEMEASHFGA IHKVFGASNF SKLLMQLPVQ  60
QRYDAVLSVL YEAEARLQDP VYGCVSHIYA LQQQVAYLKG KLYVGYAQIA ACSSSNGASL  120
NPEYGYDKQL EMPSLISTSN RIRPHDKQYV DSWGDLQHIP SGNVGMNSYN GKTRVDEGSW  180
RSLSECMQGD NSRMSAIHAL STAQEKDIAQ DADRLFEQRT PNNNGRDGDL QDLALALIRR  240
NGSTCVTTEF SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3831097111LOB family transfactor Ramosa2.1
5ly0_B7e-3831097111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411501.12e-50LOB domain-containing protein 17
TrEMBLV4M9C74e-49V4M9C7_EUTSA; Uncharacterized protein
STRINGXP_006411501.17e-50(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.15e-51lateral organ boundaries-domain 29