PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055860-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 242aa    MW: 27614.4 Da    PI: 8.2992
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055860-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74.1e-084313057
                      HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57
                      r+ L+ +lgL++rq ++WF  rR k+kk
  PSME_00055860-RA  4 RAYLSLQLGLSDRQLQMWFYHRRLKDKK 31
                      889***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.867132IPR001356Homeobox domain
CDDcd000860.00196226No hitNo description
SuperFamilySSF466896.84E-7333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-7434IPR009057Homeodomain-like
PfamPF000461.2E-5431IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAVRAYLSLQ LGLSDRQLQM WFYHRRLKDK KEKEKEKEKE KEKEKYKEKE KEKEKQPKKE  60
KSKPAPPPAP THSASLMPTS TKTNFYDDYD ARKRPTLKLN SEGGRGWKKK SFESLSTSTG  120
LVSDDILTQL EEATDVANIM EELGYGCTID VSHCKDILSF FSPLKEETVS KIISMVVRTH  180
TGLEDAHGTH STFYTSMFNS SITDSSWLSS WNIDVLLDSF KQLVSVLPFT SSQSLYSVSC  240
IC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12431RRLKDKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.24e-07Homeodomain-like transcriptional regulator