PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00055892-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 414aa MW: 45999.7 Da PI: 8.5998

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00055892-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	184	207	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y Cp+Cg+ +s + L++H+ t H PSME_00055892-RA 184 YACPICGEICSKCEALEQHQATkH 207 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	186	207	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.76E-25	209	413	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.0E-18	210	413	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MAHAKLFLKG FLAVGVLILQ LLGCLFATAI IATKKRASDQ KVSSWSSIKK FLTCKLDTNE 60 VHDPKKEAKQ SHKKCYHNIG CSGSFYSLRD IVHGNTRVMH RPETSPENSS RSSQEIVVSD 120 HSRVSMGSST RSLPSPKPQF TIHEAQGSFR GVHLRKFSGC YECHVIVDPF EAMSRDASLR 180 TTIYACPICG EICSKCEALE QHQATKHAVS ELAQDDSARN IVDIIFQTSW LKKETPCKIE 240 RVLKIHNSQK TINKFEDYRD MVKAKANKSA KKHPRCIADG NELLRFHCIT FTCSLGMNGL 300 TNLCNLPSCN VCNIIRHGFS SKVENGKGIY TTASSGKAHD SIEVSEEDES NDKRAMLVCR 360 VIAGRVNKSQ DPDECFNGGY DSLAGHAGIY SNLDELFVFN PKAVLPCFVV IYKV

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MAHAKLFLKG FLAVGVLILQ LLGCLFATAI IATKKRASDQ KVSSWSSIKK FLTCKLDTNE  60
VHDPKKEAKQ SHKKCYHNIG CSGSFYSLRD IVHGNTRVMH RPETSPENSS RSSQEIVVSD  120
HSRVSMGSST RSLPSPKPQF TIHEAQGSFR GVHLRKFSGC YECHVIVDPF EAMSRDASLR  180
TTIYACPICG EICSKCEALE QHQATKHAVS ELAQDDSARN IVDIIFQTSW LKKETPCKIE  240
RVLKIHNSQK TINKFEDYRD MVKAKANKSA KKHPRCIADG NELLRFHCIT FTCSLGMNGL  300
TNLCNLPSCN VCNIIRHGFS SKVENGKGIY TTASSGKAHD SIEVSEEDES NDKRAMLVCR  360
VIAGRVNKSQ DPDECFNGGY DSLAGHAGIY SNLDELFVFN PKAVLPCFVV IYKV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF678194	0.0	EF678194.1 Picea sitchensis clone WS0282_I08 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268701.1	1e-132	PREDICTED: uncharacterized protein LOC104605577
TrEMBL	B8LQN9	0.0	B8LQN9_PICSI; Uncharacterized protein
STRING	XP_010268701.1	1e-132	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-107	C2H2-like zinc finger protein