PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055896-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 277aa    MW: 31004.3 Da    PI: 7.8585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055896-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-1093143254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       + +h+++Er+RR+++   f+ Lr+llP        +K   ++  ++Av+Y+++L
  PSME_00055896-RA  93 KSKHKMIERQRRRDMSALFSMLRSLLPDeK---IRGKRAVSDQMQEAVNYVNYL 143
                       678*************************55...999999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.58991143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-893143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1293161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.33E-1093148No hitNo description
SuperFamilySSF474598.51E-1393161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-497149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSILSSFDSE FLYCNNVIKI FDVESKSSSY PFLSPQTQPL EDPPTYNIYN ALGNDFVGRC  60
SSGTPVSHQG LSNCRPTECQ SLNGLPGAVP ADKSKHKMIE RQRRRDMSAL FSMLRSLLPD  120
EKIRGKRAVS DQMQEAVNYV NYLHKKIEDL LAEREKLKAN SHRHGKASFE ALTLPCNENF  180
IYSKSPLREG SDPEFPIVKI KSTSSVVRVW TNTFEHQIVY SDLLLALEEG GLEVVSAASS  240
AINNKVFHTI HSKVIVFSTT QLSGNTLLPC VLYQNII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6773798e-31EF677379.1 Picea sitchensis clone WS02766_M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH56e-56B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-17bHLH family protein