PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055898-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 395aa    MW: 44284.4 Da    PI: 7.1221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055898-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.8e-12748247
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                      +y+GVr+++ rgr+ AeI+dp++   + r +lg+++taeeAa a++
  PSME_00055898-RA  7 RYRGVRRCR-RGRFGAEIHDPKT---KERRWLGNYDTAEEAACAYD 48
                      69******9.8*********954...4999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-20764IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-15765IPR016177DNA-binding domain
SMARTSM003801.3E-21770IPR001471AP2/ERF domain
PfamPF008477.6E-5748IPR001471AP2/ERF domain
PROSITE profilePS5103217.596764IPR001471AP2/ERF domain
CDDcd000184.94E-132163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MKKEAGRYRG VRRCRRGRFG AEIHDPKTKE RRWLGNYDTA EEAACAYDFS PRAMSGIKAR  60
TNFTYLNSEH CMLSTPTPPA SLTGSTFPTN IKDPFSHKPQ KLKDSWLDCL WQDSSTTRPS  120
PCDEAKQRQK QQLSVNGGYN MFGNTVSSWR PSNNAIENNN NQLLVGAGSR SVIPVSLPRD  180
HHSINASTWQ NLPLDDPLLL SLSKNTIDHT HHSTIPSPVS SSTTCSSVTK IFDHKRSFNN  240
NITITPQNAI PLSNPIQSVY FLPCLEEPAC EVCSPVSPYS YTLSSNVEHQ FQNLSDSNGH  300
SDSGLFDHII SGYLPMSVFA TSPASSVCIP KYFSNNNNLN CVVYVPQENY STINPTCTVF  360
NTSDHIMEDL ERFIETNYIV LYFNLEAQPQ PQDQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-17DORNROSCHEN-like