PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056008-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 191aa    MW: 21269.9 Da    PI: 6.379
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056008-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.82.2e-44111101100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+CakdCv+apyfpa+qp+kfa vhk+FGasnv+k+l++lp e+r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l+ +
  PSME_00056008-RA  11 PCASCKLLRRRCAKDCVFAPYFPASQPQKFASVHKVFGASNVSKMLQELPVEQRADAVSSMVYEANARVRDPVYGCVGAISYLQQQVASLQMQ 103
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00056008-RA 104 LARAQAE 110
                       **99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.37910111IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-4411108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGSSKTSGNS PCASCKLLRR RCAKDCVFAP YFPASQPQKF ASVHKVFGAS NVSKMLQELP  60
VEQRADAVSS MVYEANARVR DPVYGCVGAI SYLQQQVASL QMQLARAQAE MMCMQMQQQE  120
SLLSDSTDNI DTKQSIMATM DDHQLHYDQI LANNYHHPNS DCSTSSQDSP HQLTHAQTAY  180
DSLDIREPLW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-4871127112LOB family transfactor Ramosa2.1
5ly0_B5e-4871127112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1027030.0BT102703.1 Picea glauca clone GQ02011_K24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491008.25e-70LOB domain-containing protein 12-like
SwissprotQ8LBW33e-65LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S2XL731e-68A0A1S2XL73_CICAR; LOB domain-containing protein 12-like
STRINGXP_004491008.16e-69(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-62LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]