PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056117-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

BBR-BPC

Protein Properties

Length: 178aa MW: 20578.4 Da PI: 9.8679

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056117-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	53	1.5e-16	1	172	1	173
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92 mdd+g + ++ e++ +k++ l+ ms++a+rda i +rn+a+ ekkaa+ae++ a+ qrd a a rn a+++ d ++++l +v+++ PSME_00056117-RA 1 MDDEGRLDiWHWDTLEQS--MKDHPILKYMSVLADRDASILKRNTAFYEKKAAFAEKETALFQRDVAYAARNTAILKCDAAATTLDYVRDGGW 91 999999998888877776..*******************************************************************999877 PP GAGA_bind 93 .salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173 + +++++ls tk ++ l + +p + ++ +r + i e++ ++ +k++k+ +++k ++ +k + +++ PSME_00056117-RA 92 nGQRRFSCRTLSTTKILQVLVE--NPTFFAREFQsMRPINVAFPSSILETPLFEEPQKTVKRISKKKYGEKESPSKRNYDGSE 172 3566789999999999997766..44333333333555555555555555544444444444444443333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	6.0E-9	1	155	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MDDEGRLDIW HWDTLEQSMK DHPILKYMSV LADRDASILK RNTAFYEKKA AFAEKETALF 60 QRDVAYAARN TAILKCDAAA TTLDYVRDGG WNGQRRFSCR TLSTTKILQV LVENPTFFAR 120 EFQSMRPINV AFPSSILETP LFEEPQKTVK RISKKKYGEK ESPSKRNYDG SEPTRKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF677529	1e-164	EF677529.1 Picea sitchensis clone WS02770_D01 unknown mRNA.
GenBank	FJ982281	1e-164	FJ982281.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNW9	5e-92	B8LNW9_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	7e-08	basic pentacysteine 6