PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056126-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 782aa    MW: 84558.2 Da    PI: 6.5011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056126-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.3e-08333353526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  PSME_00056126-RA 333 PCPDFRK-GACRRGDVCEYAHG 353
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029715.32691185IPR020683Ankyrin repeat-containing domain
PfamPF127961.9E-691158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.1E-1591183IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01591121IPR002110Ankyrin repeat
SuperFamilySSF484035.44E-1491183IPR020683Ankyrin repeat-containing domain
CDDcd002041.77E-1193187No hitNo description
PROSITE profilePS5008810.553126161IPR002110Ankyrin repeat
SMARTSM002480.089126158IPR002110Ankyrin repeat
SMARTSM003561.4E-5328354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4332355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558333355IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-5333353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4361391IPR000571Zinc finger, CCCH-type
SMARTSM0035617363386IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.474363387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MCGGPEHFKP RVVYDSRVAD FDEENGVGAG EKPDSLVKEM AEPCSPALLE LAADNDLVGF  60
KQALEEGGLS VDERSLWYGR QIGFGQKMVL EQRTPLMVAA LYGSLDVLSY ILSGDRVDVN  120
QTCGLDMNTA LHCAAAGGSI LVIETVGMLI KAGADVNFMN AQGRRPADVI MVSPKVGHAK  180
NLLENLLIMG SSSPIKIPCS VSGSGLYLSE GGGCLFDEHG CAVSVPTSSP PFTPPEPTSP  240
ATANFPLSSS PPKYLDMLKN FCDCGQKKEF AVDSSLPDIK NSIYSTDEFR MYSFKVRPCS  300
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG ACRRGDVCEY AHGVFECWLH  360
PAQYRTRLCK DGTNCSRRVC FFAHTPEELR PLYPPTGSSM LSQRTMMATP DKMAAMNSVS  420
PVSASSVLML SSSNPSQGSF PNSPMSPSSP ANTTGHFSFD GGSWAHPNLP TLHLANGVLQ  480
ASRLRTAVSA RDMHPECLIE SGDYEGQLLN EFACLSTQAR GNSPLANVSS GGNTPCRPRK  540
FKTQNVAPTN LEDLFASEAF SPKMTASESA FLSKIQSHKA AQLSPQRQSQ MQSSFNTQVY  600
PQVQMHMQHG GIDCQSPNVF LSPPSVQPAS YSLSSLGPLS SLTGELERQN SNGSPLSPVM  660
SGAANSKAVP FAQRDRSRSR SRDLGGGASW SEWGSPSGKV DWGIQGEELQ KFRKSASFGI  720
RSSDEPDLSW VQTLFKEAPA KLMEGGTTGH SVDTANNVQM EATDLGVWIS QINPDQMASL  780
TL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1673681RDRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QYQ80.0A0A0D6QYQ8_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-119CCCH-type zinc finger protein with ARM repeat domain