PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056140-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 241aa    MW: 26508 Da    PI: 4.6754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056140-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-172474155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s++kG+r +k +g+Wv+eIr p++   r + +lg++ tae+Aa+a++aa  +l+g
  PSME_00056140-RA 24 SQFKGIRKRK-WGSWVSEIRMPRS---REKLWLGSYTTAEQAARAYDAAVCCLRG 74
                      789****999.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.18E-262484No hitNo description
SuperFamilySSF541711.77E-182484IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-282583IPR001471AP2/ERF domain
PROSITE profilePS5103221.0612582IPR001471AP2/ERF domain
SMARTSM003806.5E-312588IPR001471AP2/ERF domain
PfamPF008471.1E-92574IPR001471AP2/ERF domain
PRINTSPR003671.2E-72637IPR001471AP2/ERF domain
PRINTSPR003671.2E-74864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAKIPRAEHA QALAEEDPAA LKSSQFKGIR KRKWGSWVSE IRMPRSREKL WLGSYTTAEQ  60
AARAYDAAVC CLRGPNATFN FPNSVPSIPS ASSLSRHQIK LAAARYATLD QLPSISASAH  120
NNNNNENGNA NNDNDNNKAR DDSASPSQSA LVQETMSLMN GQHHQQEDDL ALWESLFAGP  180
DDCPAKNSEN LPSTDEASAL KLIPFPSPSW AEQRHEQPEA DEEGDMNSFL DVTDLWNFGD  240
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ94e-58D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.17e-30ERF family protein