PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056166-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 190aa    MW: 21358.1 Da    PI: 9.9919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056166-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-202776255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr+++ +g+Wv+eIr+p++   +kr++lg+++t+++Aa+a++ a+++l+g
  PSME_00056166-RA 27 IYRGVRRRR-WGKWVSEIREPRK---KKRIWLGSYDTPQMAARAHDVAALCLKG 76
                      69****777.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.98E-312686No hitNo description
PfamPF008471.2E-142676IPR001471AP2/ERF domain
SMARTSM003803.8E-352790IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-222785IPR016177DNA-binding domain
PROSITE profilePS5103223.7092784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-312785IPR001471AP2/ERF domain
PRINTSPR003679.9E-102839IPR001471AP2/ERF domain
PRINTSPR003679.9E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGELESKKRM KRACRESEAG STVSYPIYRG VRRRRWGKWV SEIREPRKKK RIWLGSYDTP  60
QMAARAHDVA ALCLKGKAAF LNFPDLVNAF PRPSSLDPCD IQSAAAEAAR AFHAETSSVQ  120
SSSSHSHRSY ADQTYYNAIS ESLRETLGPD QAENSLRKQQ ATANSASIPC TELELRLNLW  180
WPSKIIQGTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-182088776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13250RRRWGKWVSEIREPRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1182671e-109BT118267.1 Picea glauca clone GQ04004_G10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421439.16e-42PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391271e-40TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD33e-40DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D6R4W13e-48A0A0D6R4W1_ARACU; Uncharacterized protein
STRINGXP_010421439.12e-41(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]