PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056197-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 402aa    MW: 44506.6 Da    PI: 10.1927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056197-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-184292155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GVr +k +g+Wv+e+r+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  PSME_00056197-RA 42 SPYRGVRMRK-WGKWVSEVREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 92
                      68******99.*******9998...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-2042100IPR016177DNA-binding domain
SMARTSM003803.9E-3643106IPR001471AP2/ERF domain
PROSITE profilePS5103222.98543100IPR001471AP2/ERF domain
PfamPF008471.6E-114492IPR001471AP2/ERF domain
CDDcd000188.13E-2944102No hitNo description
PRINTSPR003673.8E-94455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-3044101IPR001471AP2/ERF domain
PRINTSPR003673.8E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEHECSTSEP HGSGGGGGMK RSSTGSGGGG GVVLGGGGGK GSPYRGVRMR KWGKWVSEVR  60
EPNKRSRIWL GSYSTPEAAA RAYDTAVFYL RGPSAALNFP EVARREQQSD FRLLQRGELS  120
PSTIQRRAAE VGAAVDHALQ TVPNPTHALR EINQGNDIKQ ALSSKLTEAD NFKIELQGLS  180
SKPSGNICKL DEKNNMRLQG LSSKPSGSIS KLDEKNNTRL QGFNSKPSDS NFFQFEEKNN  240
MKLQGLNSKL SESDTFQFEE KNNTKLQGLK SKPSENNIFQ LEEKNNRRLE SFNSKLSESK  300
TSKFDEKNIM RLQGFIPRSN KKSEFCKVEG IKEAADDEKP EQNRVNFRER DWFAVKDPAS  360
LAGTALSLRQ FTFPTNVQAS TDHGGEHPTL GLSTVFRPEK RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1540100263ATERF1
3gcc_A1e-1540100263ATERF1
5wx9_A5e-1536101773Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012871e-162BT101287.1 Picea glauca clone GQ01301_D23 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-42DREB and EAR motif protein 2