PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056199-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 133aa MW: 15418.8 Da PI: 9.6889

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056199-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.6	4.2e-19	41	86	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l PSME_00056199-RA 41 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKVFGASNVSKML 86 7*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.584	40	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-18	41	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MNFREKVEGF DSVNRRVKRI ETERVRRTMI GAQSSPNTST PCAACKLLRR RCAQECPFSP 60 YFSPHEPQKF ACVHKVFGAS NVSKMLLVRL YSELNSIIHI QQKQEDAHCF LKISIRLLAC 120 NANTFQIYEH ENK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-20	32	86	2	56	LOB family transfactor Ramosa2.1
5ly0_B	2e-20	32	86	2	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT111908	1e-103	BT111908.1 Picea glauca clone GQ03307_E24 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684598.1	2e-35	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_021625453.1	2e-34	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	8e-32	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2R6WX81	6e-37	A0A2R6WX81_MARPO; Uncharacterized protein
STRING	cassava4.1_029925m	6e-34	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-34	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]