PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056231-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 451aa    MW: 49945.4 Da    PI: 6.571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056231-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-153381254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ rgr++AeI dp++   + r +lg++gtaeeAa a++ a++++ 
  PSME_00056231-RA 33 RYRGVRRRP-RGRFAAEIGDPKT---KERRWLGTYGTAEEAACAYDFAARAMS 81
                      69*******.8*********954...4999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-273396IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853390IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-173390IPR016177DNA-binding domain
PfamPF008471.2E-93382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-233389IPR001471AP2/ERF domain
PRINTSPR003672.0E-63445IPR001471AP2/ERF domain
CDDcd000184.93E-164589No hitNo description
PRINTSPR003672.0E-65672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MKSQQQSELQ KNESLSPNKL SEKQFKRGKE AGRYRGVRRR PRGRFAAEIG DPKTKERRWL  60
GTYGTAEEAA CAYDFAARAM SGIKARSNFI YLNSEHCMLS TATPPASLTG STFPTNINDP  120
FSHKPQKLQD SWLDCLWRDS STTRPGPCNE AKQQQQKQQF SVNGGYNMLG NTVSSWRPSN  180
NEIENNNNQF LAGAGSSSVV PVSLPRDHHS INASTWQNLP LADPLLLSLS KNTIDHTHRS  240
TIPFPVSSST TCSSVTKIND HKPAFNNNIT ITPENAIPLS NLVESVYFLA CSEEPGSEVC  300
SPVSPYSYTL SCNVEHQFQN LADSNGHSDL GLLDQIISGY LPMSVSATNP ASSVCIPKYF  360
SNNNTLNCVV CVPQENYSTI TPTCTGFNTT DHIMADLERF IETNYIGLYC NPEAQQQPQD  420
QQQQLEANNF NSTHFSAPSP YTDYLFSIPP I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-162889971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-09DORNROSCHEN-like