PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056235-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 374aa    MW: 40992.8 Da    PI: 7.8456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056235-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384.2e-123482254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ +gr++AeI+dp++   + + +lg++ ta eAa  ++ a++++ 
  PSME_00056235-RA 34 RYRGVRRRP-WGRFAAEICDPKT---KEQRWLGTYNTAGEAACSYDFAARAMS 82
                      69*******.**********954...5999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-163491IPR016177DNA-binding domain
PROSITE profilePS5103218.9933491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-233490IPR001471AP2/ERF domain
CDDcd000181.34E-223490No hitNo description
PfamPF008473.9E-73482IPR001471AP2/ERF domain
SMARTSM003801.4E-253497IPR001471AP2/ERF domain
PRINTSPR003671.3E-63546IPR001471AP2/ERF domain
PRINTSPR003671.3E-65773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKSQQQQSEL QKNESLSPNK LSEKQLKRGK EAGRYRGVRR RPWGRFAAEI CDPKTKEQRW  60
LGTYNTAGEA ACSYDFAARA MSGIKAPTNF IYLNSEHCML STPTPPASLT GSTFPTNIKD  120
PFSHKPQKLQ DSWLDCLWRD SSTKRPGPCD EAKQQQKKQQ FSVNGGYNML GSTASSWRPS  180
NTEIENNNNQ LLAGAGASSV VPVSLPRDHH SINASTWQNL PLADPLMLSL SKNTIDHTHC  240
STIPSPVCSS TTFSSVTKIS DHKPAFNNNI TITPENAIPL SNPVESVYFF PCLEEPSSDV  300
CSPVSPYSYT LSSNVEHQFQ NLADSNGHSD SGLLDQIIRG DLPMSVSATS PASSVCIPKF  360
FSNNNTLNCA VCVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-152990971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-17DORNROSCHEN-like