PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056265-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LSD
Protein Properties Length: 95aa    MW: 9894.68 Da    PI: 7.0706
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056265-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.42.4e-132650125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCrtlL YP G+p+V+Ca+C+tV
  PSME_00056265-RA 26 CSGCRTLLVYPQGSPNVCCAVCNTV 50
                      ************************9 PP
2zf-LSD126.88.4e-096488125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      Cg CrtlL+Y  GA+ V+C++C tV
  PSME_00056265-RA 64 CGCCRTLLMYAHGATGVQCSCCSTV 88
                      ***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.4E-132351IPR005735Zinc finger, LSD1-type
PfamPF069435.7E-122650IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.5E-126190IPR005735Zinc finger, LSD1-type
PfamPF069439.2E-96488IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MPLHMNPYPP QPMPLPPPNG QGQLVCSGCR TLLVYPQGSP NVCCAVCNTV TVAPPGAEMA  60
QLICGCCRTL LMYAHGATGV QCSCCSTVNL AMEAN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269986.18e-38PREDICTED: protein LSD1
RefseqXP_010269987.18e-38PREDICTED: protein LSD1
RefseqXP_010269988.18e-38PREDICTED: protein LSD1
SwissprotQ93ZB15e-32LOL1_ARATH; Protein LOL1
TrEMBLA0A0C9RP332e-44A0A0C9RP33_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_6820_1247 transcribed RNA sequence
STRINGXP_010269986.13e-37(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-21lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]