PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00056307-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 107aa MW: 12446 Da PI: 4.8843

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00056307-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	31.7	4.2e-10	44	91	53	100
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +red++s++vyeA+ rdPv+ vgvi++l++++++++++ a++++e PSME_00056307-RA 44 QREDVVSTMVYEARQIFRDPVHDYVGVISDLHKKVAEMQTQSASTQTE 91 89***************************************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.55	1	92	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-8	44	89	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MVLQDLPAEQ REDAIRSMVY EAKQRFQRED VVSSMVYEAR QRFQREDVVS TMVYEARQIF 60 RDPVHDYVGV ISDLHKKVAE MQTQSASTQT ELDNISVQHA NLLTLSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LP64	2e-21	B8LP64_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-13	LOB domain-containing protein 1