PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056324-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 275aa    MW: 30178.6 Da    PI: 4.9382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056324-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-1661110255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr++  +g+Wv+eI++p   +k++r+ lg+f+t+e+Aa+a++ a  +l+g
  PSME_00056324-RA  61 TYRGVRRRN-WGKWVSEIKEP---NKQTRICLGSFDTPEMAARAYDVAEVYLKG 110
                       69****877.**********8...336********************9988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1861120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-2761120IPR001471AP2/ERF domain
SMARTSM003801.1E-2661125IPR001471AP2/ERF domain
PROSITE profilePS5103220.99561119IPR001471AP2/ERF domain
PfamPF008472.4E-1061108IPR001471AP2/ERF domain
CDDcd000181.15E-2562121No hitNo description
PRINTSPR003672.0E-86273IPR001471AP2/ERF domain
PRINTSPR003672.0E-884100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSMDKEASSL PKTMVSSSTD TGGASRTYAS TAEGGVKTIR TQDEAVPSLT QERTLKVKYP  60
TYRGVRRRNW GKWVSEIKEP NKQTRICLGS FDTPEMAARA YDVAEVYLKG KKHALLNFPE  120
LIDYIPHPLS LSARHIQAAT AEAAAAFYFA RVGNSGWPSD SNKRTRRSPR NPPVSNEFSS  180
SSSSSYQLCT GSVSSDFETA SVELSGQTSS SMSSSVCTPA ECVGESECVV VEEDLFESMN  240
LFTDLAEALL LSPPPLFSIH EEEHNLEEGF LWSDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ61e-110D5ABJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-32ERF family protein