PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056344-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 398aa    MW: 41967.9 Da    PI: 4.3849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056344-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19208258256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr++  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +l+g+
  PSME_00056344-RA 208 TYRGVRRRN-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAYDVAAFALKGH 258
                       69****877.**********854...6*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-23208267IPR016177DNA-binding domain
PfamPF008471.3E-13208258IPR001471AP2/ERF domain
SMARTSM003806.8E-37208271IPR001471AP2/ERF domain
PROSITE profilePS5103224.25208265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32208267IPR001471AP2/ERF domain
CDDcd000181.20E-33209267No hitNo description
PRINTSPR003673.3E-10209220IPR001471AP2/ERF domain
PRINTSPR003673.3E-10231247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVHFSSTHDN SSSFVRTQYR IPAPAAAPVC TPTGSVLISP FPSPPTYDSP VGLGDAFPCV  60
EHRLSSKPGL LGGDWRDSCG SPLLFDCEIA CGDSSEENPG NEGEGRSGSV SPSGGVPLQG  120
KATEDIEVEV EEEGGSTSAS DDHSQSTQYL TKEENSSDQL TRPQSEEEEQ TLQQPVSSGP  180
EGPAPRGRRW GGGGGGRGGV HETARRPTYR GVRRRNWGKW VSEIREPKKK SRIWLGTFPT  240
PEMAARAYDV AAFALKGHSA YLNFPDSISS LPMPLSSSPR DIQAAASAAA AAFTEEAHAS  300
ASASTSSSFP AQTSAGDPGP SMAVANITSP IMAESSSTDQ QLPQSESAFI DEDMIFDMPN  360
ILTAMAEGMM LSPPRLQQDS SGDNGDDGAE PCLWSHSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17195265472Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-31C-repeat/DRE binding factor 1