PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056361-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 232aa    MW: 25567.3 Da    PI: 9.8305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056361-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19147196355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+++AeIrdp +  k +r++lg+f taeeAa a+++a+ k++g
  PSME_00056361-RA 147 YRGVRQRP-WGKFAAEIRDPAK--KGARVWLGTFNTAEEAALAYDRAAFKIRG 196
                       9*******.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-39146210IPR001471AP2/ERF domain
PROSITE profilePS5103224.236146204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-32146204IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23146205IPR016177DNA-binding domain
PRINTSPR003673.6E-11147158IPR001471AP2/ERF domain
PfamPF008476.8E-14147196IPR001471AP2/ERF domain
CDDcd000181.02E-30147204No hitNo description
PRINTSPR003673.6E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNKSEADAYC DRPEPTMDVA GTVSINLNML KLIRHHLLEV EDEIDDINGE NPSSSSSFSF  60
SPTVMASGSE DYNHTNASAA TAATWGSWQN NSRRSPSEVN ENQYTQDCSS SSSVSTVTRR  120
GDDSKVKPRS HGKRNGEMKQ ISRARLYRGV RQRPWGKFAA EIRDPAKKGA RVWLGTFNTA  180
EEAALAYDRA AFKIRGSKAL VNFPLALSSN SENGSAVGHM AHKRKREKRA DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-33142210169ATERF1
3gcc_A5e-33142210169ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405057.13e-34PREDICTED: ethylene-responsive transcription factor 1A-like
TrEMBLA9NMA32e-71A9NMA3_PICSI; Uncharacterized protein
STRINGGSMUA_Achr6P04440_0014e-34(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-25ethylene responsive element binding factor 2