PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056380-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 224aa    MW: 24373.2 Da    PI: 10.0354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056380-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19123174256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr++  +g++ AeIrdp +ng  +r++lg+f taeeAa a+++a+ +++g+
  PSME_00056380-RA 123 HYRGVRRRT-WGKFTAEIRDPGKNG--ARIWLGTFNTAEEAALAYDRAAFRIRGA 174
                       7*****877.**********97776..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-30122181IPR001471AP2/ERF domain
CDDcd000183.14E-26123181No hitNo description
SMARTSM003803.8E-35123187IPR001471AP2/ERF domain
PfamPF008472.7E-13123173IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23123182IPR016177DNA-binding domain
PROSITE profilePS5103223.578123181IPR001471AP2/ERF domain
PRINTSPR003671.7E-10124135IPR001471AP2/ERF domain
PRINTSPR003671.7E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMNMLELIRH HLLEEEDIHH NATVICISDD NNNIIKANAT AVAWSSGQNS NNSSTSQHER  60
IRSSSVSGAV IRSAEALKAN VKPQAHKEEN GGRAMHYRAD AVKVKVKSQA HEEENGEMAS  120
HRHYRGVRRR TWGKFTAEIR DPGKNGARIW LGTFNTAEEA ALAYDRAAFR IRGAKALVNF  180
PLAFADNAEN GAAVGHMAHK RERRNGGGGL HVVGGAAGVE AIGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-32119182164ATERF1
3gcc_A6e-32119182164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0824032e-52EF082403.1 Picea sitchensis clone WS0282_K22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA32e-55A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-24ethylene responsive element binding factor 1