PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056418-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 565aa    MW: 62462 Da    PI: 5.4128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056418-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00072951123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C+k+F +   L  H+r H
  PSME_00056418-RA 29 YFCKICSKRFVSGRALGGHMRAH 51
                      78*******************98 PP
2zf-C2H212.10.00059137155321
                       ETTTTEEESSHHHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                       C  Cgk Fs++  L  H++
  PSME_00056418-RA 137 CDLCGKEFSSWKGLFGHMK 155
                       9*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.9722951IPR007087Zinc finger, C2H2
SMARTSM003550.0272951IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.79E-82951No hitNo description
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
PfamPF139121.2E-73151IPR007087Zinc finger, C2H2
SuperFamilySSF576679.79E-8130157No hitNo description
SMARTSM003550.0083135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577135162IPR007087Zinc finger, C2H2
PfamPF139124.9E-7136159IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
PfamPF139123.2E-12310335IPR007087Zinc finger, C2H2
SuperFamilySSF576678.17E-7311333No hitNo description
PROSITE profilePS5015710.055311338IPR007087Zinc finger, C2H2
SMARTSM003550.069311333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
SuperFamilySSF576678.17E-7405432No hitNo description
PfamPF139123.3E-13409434IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889410437IPR007087Zinc finger, C2H2
SMARTSM003550.44410432IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280412432IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MTTVDILYPS SQAMEVFKKQ EEAEDPLNYF CKICSKRFVS GRALGGHMRA HGPASMAADT  60
VSETELQKTK RPRASDDKPV EEKEEEEDEE GLDGNGSNLM YALRRNPKRS WRLADRDYSF  120
MLGHGFDSKP IDSSVNCDLC GKEFSSWKGL FGHMKCHPET HQATGDAHLQ ESQKNDAQDE  180
EEGEGESESD AEIEIDHPSG NSSRFDKCMK GKRSKRPRYA VQFNPHEQFG SEINNEEEDM  240
AMCLVMLASG INTAQSSEFQ AGAEETGSGD LKLSNTGSQL LPKCIKKKPK AKKIDGDAGL  300
NDGDEAKKAR YNCTTCNKVF HSYQALGGHR ASHKKVKGCF SQIEDEYESL QEEITDEELI  360
TGSDSQLPVN FHKPSPKVRT KDSCIETGEA SDETTTIQPA AFSGKKTRVH ECSICHRVFS  420
SGQALGGHKR CHWGSAGASD TISTISSNKE TPMQQQQMPA RMELLDLNLP APVDDDSEAG  480
NHNNLGRNVV DSHGASYAET HSKINPPYFQ SWLMGTYPKQ GLFLYKNNTH LSKDDEADSK  540
LGKEIGFGGG CDSDLTDRAK SWLQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ10.0A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-24C2H2-like zinc finger protein